Transcript: CIRBP-AS1:3

Basic information

LNCipedia transcript ID: CIRBP-AS1:3 
LNCipedia gene ID: CIRBP-AS1
Ensembl Gene ID: ENSG00000267493
Ensembl Transcript ID: ENST00000585832
Location (hg38): chr19:1267814-1270241
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 994 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000585832.2
Alternative gene names: ENSG00000267493.3; CIRBP-AS1; MGC39338


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -108.4682 non-coding 
CPAT coding probability 13.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CIRBP-AS1:3 yes no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 CIRBP-AS1:3
4.1 CIRBP-AS1:3
5.0 CIRBP-AS1:3
5.1 CIRBP-AS1:3
5.2 CIRBP-AS1:3