Transcript: CISTR:1

Basic information

LNCipedia transcript ID: CISTR:1 
LNCipedia gene ID: CISTR
RefSeq ID: NR_104332
Location (hg38): chr12:53750447-53757034
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 856 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_104332; NR_104332.1
Alternative gene names: CISTR-ACT; CISTRACT; re52431; CISTR


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -55.8877 non-coding 
CPAT coding probability 6.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CISTR:1 no no no no

Available literature

  1. Maass (2012), A misplaced lncRNA causes brachydactyly in humans., J. Clin. Invest.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CALCOCO1-1:4
4.0 CISTR:1
4.1 CISTR:1
5.0 CISTR:1
5.1 CISTR:1
5.2 CISTR:1