Transcript: CISTR:2

Basic information

LNCipedia transcript ID: CISTR:2 
HGNC Gene Symbol: CISTR    
HGNC Full Gene Name: chondrogenesis-associated transcript
Ensembl Gene ID: ENSG00000260492
Ensembl Transcript ID: ENST00000626733
Location (hg38): chr12:53750839-53757034
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 464 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000626733.1
Alternative gene names: ENSG00000260492.2; CISTR; CISTR-ACT; CISTRACT; re52431


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -55.8877 non-coding 
CPAT coding probability 5.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CISTR:2 no no no no

Available literature

  1. Maass (2012), A misplaced lncRNA causes brachydactyly in humans., J. Clin. Invest.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 CISTR:2
4.1 CISTR:2
5.0 CISTR:2
5.1 CISTR:2
5.2 CISTR:2