Transcript: CISTR:4

Basic information

LNCipedia transcript ID: CISTR:4 
LNCipedia gene ID: CISTR
Location (hg38): chr12:53746697-53751896
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 924 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00021315; NONHSAT028495
Alternative gene names: XLOC_010084; linc-CALCOCO1-6; CISTR-ACT; CISTRACT; re52431


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -55.8877 non-coding 
CPAT coding probability 5.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CISTR:4 no no no no

Available literature

  1. Maass (2012), A misplaced lncRNA causes brachydactyly in humans., J. Clin. Invest.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CALCOCO1-1:2
3.1 lnc-CALCOCO1-1:2
4.0 CISTR:4
4.1 CISTR:4
5.0 CISTR:4
5.1 CISTR:4
5.2 CISTR:4