Transcript: CISTR:9

Basic information

LNCipedia transcript ID: CISTR:9 
LNCipedia gene ID: CISTR
Location (hg38): chr12:53745941-53751979
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1389 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000260492.1|HBMT00000331814.1
Alternative gene names: CISTR-ACT; CISTRACT; re52431


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -55.8877 non-coding 
CPAT coding probability 6.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CISTR:9 no no no no

Available literature

  1. Maass (2012), A misplaced lncRNA causes brachydactyly in humans., J. Clin. Invest.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 CISTR:9
5.0 CISTR:9
5.1 CISTR:9
5.2 CISTR:9