Transcript: CLDN10-AS1:2

Basic information

LNCipedia transcript ID: CLDN10-AS1:2 
HGNC Gene Symbol: CLDN10-AS1    
HGNC Full Gene Name: CLDN10 antisense RNA 1
Ensembl Gene ID: ENSG00000223392
Ensembl Transcript ID: ENST00000416909
RefSeq ID: NR_046533
Location (hg38): chr13:95479444-95533910
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 895 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000416909; ENST00000416909.1; CLDN10-AS1-001; OTTHUMT00000045490.1; NONHSAT034761; NR_046533; NR_046533.1
Alternative gene names: ENSG00000223392; CLDN10-AS1; ENSG00000223392.1; OTTHUMG00000017220.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -32.5454 non-coding 
CPAT coding probability 0.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CLDN10-AS1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DZIP1-2:1
3.1 lnc-DZIP1-2:1
4.0 CLDN10-AS1:2
4.1 CLDN10-AS1:2
5.0 CLDN10-AS1:2
5.1 CLDN10-AS1:2
5.2 CLDN10-AS1:2