Transcript: CLMAT3:9

Basic information

LNCipedia transcript ID: CLMAT3:9 
LNCipedia gene ID: CLMAT3
Location (hg38): chr5:151718529-151726300
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1781 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00010141; NONHSAT104627
Alternative gene names: XLOC_004606; linc-G3BP1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.3097 non-coding 
CPAT coding probability 4.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CLMAT3:9 no no no no

Available literature

  1. Peffers (2015), Transcriptome analysis of ageing in uninjured human Achilles tendon., Arthritis Res. Ther.
  2. Ye (2015), Aberrant expression of long noncoding RNAs in colorectal cancer with liver metastasis., Tumour Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-G3BP1-1:3
3.1 lnc-G3BP1-2:3
4.0 lnc-G3BP1-2:3
4.1 lnc-G3BP1-2:3
5.0 lnc-G3BP1-2:3
5.1 CLMAT3:5
5.2 CLMAT3:9