Transcript: CNTN4-AS2:1

Basic information

LNCipedia transcript ID: CNTN4-AS2:1 
HGNC Gene Symbol: CNTN4-AS2    
HGNC Full Gene Name: CNTN4 antisense RNA 2
Ensembl Gene ID: ENSG00000227588
Ensembl Transcript ID: ENST00000447256
RefSeq ID: NR_046555
Location (hg38): chr3:2110409-2144241
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 426 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000447256; ENST00000447256.2; CNTN4-AS2-001; OTTHUMT00000343338.2; NONHSAT087590; NR_046555; NR_046555.1
Alternative gene names: ENSG00000227588; CNTN4-AS2; ENSG00000227588.2; OTTHUMG00000156185.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -51.4788 non-coding 
CPAT coding probability 3.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CNTN4-AS2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IL5RA-1:1
3.1 lnc-IL5RA-2:1
4.0 CNTN4-AS2:1
4.1 CNTN4-AS2:1
5.0 CNTN4-AS2:1
5.1 CNTN4-AS2:1
5.2 CNTN4-AS2:1