Transcript: COX10-AS1:13

Basic information

LNCipedia transcript ID: COX10-AS1:13 
LNCipedia gene ID: COX10-AS1
Location (hg38): chr17:13776634-13792550
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2998 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000423323; ENST00000423323.1; AC015842.1-001; OTTHUMT00000129955.1; NONHSAT145730
Alternative gene names: ENSG00000236088; AC015842.1; ENSG00000236088.2; OTTHUMG00000058771.3; ENSG00000236088.5; COX10-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -90.6826 non-coding 
CPAT coding probability 0.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
COX10-AS1:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HS3ST3A1-2:1
3.1 lnc-HS3ST3A1-4:3
4.0 COX10-AS1:13
4.1 COX10-AS1:13
5.0 COX10-AS1:13
5.1 COX10-AS1:13
5.2 COX10-AS1:13