Transcript: COX10-AS1:4

Basic information

LNCipedia transcript ID: COX10-AS1:4 
HGNC Gene Symbol: COX10-AS1    
HGNC Full Gene Name: COX10 antisense RNA 1
Ensembl Gene ID: ENSG00000236088
Ensembl Transcript ID: ENST00000449363
RefSeq ID: NR_049718
Location (hg38): chr17:14029292-14069458
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1944 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000449363; ENST00000449363.1; COX10-AS1-001; OTTHUMT00000129996.1; NONHSAT145752; NR_049718; NR_049718.1
Alternative gene names: ENSG00000223385; COX10-AS1; ENSG00000223385.1; OTTHUMG00000058808.2; ENSG00000236088.5; ENSG00000236088.9;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.409 non-coding 
CPAT coding probability 9.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
COX10-AS1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CDRT15-2:1
3.1 lnc-CDRT15-2:1
4.0 COX10-AS1:4
4.1 COX10-AS1:4
5.0 COX10-AS1:4
5.1 COX10-AS1:4
5.2 COX10-AS1:4