Transcript: CPB2-AS1:3

Basic information

LNCipedia transcript ID: CPB2-AS1:3 
HGNC Gene Symbol: CPB2-AS1    
HGNC Full Gene Name: CPB2 antisense RNA 1
Ensembl Gene ID: ENSG00000235903
Ensembl Transcript ID: ENST00000606991
RefSeq ID: NR_046227
Location (hg38): chr13:46052848-46101347
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3218 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT033623; NR_046227; ENST00000606991.1; ENST00000606991.5; NR_046227.1
Alternative gene names: ENSG00000235903.3; CPB2-AS1; ENSG00000235903.7;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -17.5283 non-coding 
CPAT coding probability 2.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CPB2-AS1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LRRC63-1:4
4.0 CPB2-AS1:3
4.1 CPB2-AS1:3
5.0 CPB2-AS1:3
5.1 CPB2-AS1:3
5.2 CPB2-AS1:3