Transcript: CPB2-AS1:4

Basic information

LNCipedia transcript ID: CPB2-AS1:4 
HGNC Gene Symbol: CPB2-AS1    
HGNC Full Gene Name: CPB2 antisense RNA 1
Ensembl Gene ID: ENSG00000235903
Ensembl Transcript ID: ENST00000606243
Location (hg38): chr13:46052848-46100024
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2185 bp
Exons: 4
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000606243.1; ENST00000606243.5
Alternative gene names: ENSG00000235903.3; CPB2-AS1; ENSG00000235903.7;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.9801 non-coding 
CPAT coding probability 5.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CPB2-AS1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LRRC63-1:5
4.0 CPB2-AS1:4
4.1 CPB2-AS1:4
5.0 CPB2-AS1:4
5.1 CPB2-AS1:4
5.2 CPB2-AS1:4