Transcript: CPB2-AS1:7

Basic information

LNCipedia transcript ID: CPB2-AS1:7 
LNCipedia gene ID: CPB2-AS1
Location (hg38): chr13:46094893-46113332
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 644 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000415033; ENST00000415033.1; CPB2-AS1-001; OTTHUMT00000044801.1; NONHSAT033625
Alternative gene names: ENSG00000235903; CPB2-AS1; ENSG00000235903.1; OTTHUMG00000016865.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -59.9002 non-coding 
CPAT coding probability 4.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CPB2-AS1:7 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LRRC63-1:1
3.1 lnc-LRRC63-1:1
4.0 CPB2-AS1:7
4.1 CPB2-AS1:7
5.0 CPB2-AS1:7
5.1 CPB2-AS1:7
5.2 CPB2-AS1:7