Transcript: CPEB2-DT:21

Basic information

LNCipedia transcript ID: CPEB2-DT:21 
HGNC Gene Symbol: CPEB2-DT    
HGNC Full Gene Name: CPEB2 divergent transcript
Ensembl Gene ID: ENSG00000247624
Ensembl Transcript ID: ENST00000500394
RefSeq ID: NR_038857
Location (hg38): chr4:14909961-15002045
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1630 bp
Exons: 8
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000500394; ENST00000500394.2; AC006296.3-001; OTTHUMT00000360403.2; NONHSAT095610; NR_038857; ENST00000500394.6; NR_038857.1
Alternative gene names: ENSG00000247624; AC006296.3; ENSG00000247624.2; OTTHUMG00000160381.3; CPEB2-AS1; ENSG00000247624.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -22.5322 non-coding 
CPAT coding probability 0.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CPEB2-DT:21 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FBXL5-1:1
3.1 lnc-FBXL5-3:1
4.0 CPEB2-AS1:1
4.1 CPEB2-AS1:1
5.0 CPEB2-AS1:1
5.1 CPEB2-DT:8
5.2 CPEB2-DT:21