Transcript: CPS1-IT1:1

Basic information

LNCipedia transcript ID: CPS1-IT1:1 
LNCipedia gene ID: CPS1-IT1
Location (hg38): chr2:210617571-210619875
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2305 bp
Exons: 1
Sources: NONCODE v4; Refseq - Dec 2014
Alternative transcript names: NONHSAT076682; NR_002763
Alternative gene names: PRO0132; CPS1-IT


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -135.7538 non-coding 
CPAT coding probability 1.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CPS1-IT1:1 no no no no

Available literature

  1. Xiaoguang (2017), Long Noncoding RNA CPS1-IT1 Suppresses Cell Proliferation and Metastasis in Human Lung Cancer., Oncol. Res.
  2. Wang (2015), Multidrug-Resistance Related Long Non-Coding RNA Expression Profile Analysis of Gastric Cancer., PLoS ONE
  3. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RPE-12:1
4.0 CPS1-IT1:1
4.1 CPS1-IT1:1
5.0 CPS1-IT1:1
5.1 CPS1-IT1:1
5.2 CPS1-IT1:1