Transcript: CSE1L-AS1:3

Basic information

LNCipedia transcript ID: CSE1L-AS1:3 
HGNC Gene Symbol: CSE1L-AS1    
HGNC Full Gene Name: CSE1L antisense RNA 1
Ensembl Gene ID: ENSG00000227431
Ensembl Transcript ID: ENST00000428190
Location (hg38): chr20:49040463-49046044
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 333 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028061; ENST00000428190.1; RP1-155G6.4-002; OTTHUMT00000079630.1; NONHSAT080195
Alternative gene names: XLOC_013781; linc-PREX1-2; ENSG00000227431.1; RP1-155G6.4; OTTHUMG00000032688.1; ENSG00000227431.5; CSE1L-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CSE1L-AS1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-STAU1-1:1
3.1 lnc-STAU1-1:1
4.0 CSE1L-AS1:3
4.1 CSE1L-AS1:3
5.0 CSE1L-AS1:3
5.1 CSE1L-AS1:3
5.2 CSE1L-AS1:3