Transcript: CSE1L-AS1:6

Basic information

LNCipedia transcript ID: CSE1L-AS1:6 
LNCipedia gene ID: CSE1L-AS1
Location (hg38): chr20:49040387-49043378
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 453 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00028695
Alternative gene names: XLOC_013781; linc-PREX1-2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.0757 non-coding 
CPAT coding probability 8.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CSE1L-AS1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-STAU1-1:2
3.1 lnc-STAU1-1:3
4.0 CSE1L-AS1:6
4.1 CSE1L-AS1:6
5.0 CSE1L-AS1:6
5.1 CSE1L-AS1:6
5.2 CSE1L-AS1:6