Transcript: CSNK1G2-AS1:2

Basic information

LNCipedia transcript ID: CSNK1G2-AS1:2 
LNCipedia gene ID: CSNK1G2-AS1
RefSeq ID: NR_033400
Location (hg38): chr19:1952527-1954549
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1313 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT060381; NR_033400; NR_033400.1
Alternative gene names: MGC39696; CSNK1G2-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.0852 non-coding 
CPAT coding probability 49.34% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
CSNK1G2-AS1:2 yes no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CSNK1G2-AS1-1:3
4.0 CSNK1G2-AS1:2
4.1 CSNK1G2-AS1:2
5.0 CSNK1G2-AS1:2
5.1 CSNK1G2-AS1:2
5.2 CSNK1G2-AS1:2