Transcript: CSNK1G2-AS1:3

Basic information

LNCipedia transcript ID: CSNK1G2-AS1:3 
HGNC Gene Symbol: CSNK1G2-AS1    
HGNC Full Gene Name: CSNK1G2 antisense RNA 1
Ensembl Gene ID: ENSG00000180846
Ensembl Transcript ID: ENST00000314315
Location (hg38): chr19:1952531-1954549
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1252 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT060382; ENST00000314315.3; ENST00000314315.7
Alternative gene names: ENSG00000180846.4; CSNK1G2-AS1; ENSG00000180846.8; MGC39696


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.0852 non-coding 
CPAT coding probability 49.42% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
CSNK1G2-AS1:3 yes no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CSNK1G2-AS1-1:2
4.0 CSNK1G2-AS1:3
4.1 CSNK1G2-AS1:3
5.0 CSNK1G2-AS1:3
5.1 CSNK1G2-AS1:3
5.2 CSNK1G2-AS1:3