Transcript: CSTF3-DT:21

Basic information

LNCipedia transcript ID: CSTF3-DT:21 
HGNC Gene Symbol: CSTF3-DT    
HGNC Full Gene Name: CSTF3 divergent transcript
Ensembl Gene ID: ENSG00000247151
Ensembl Transcript ID: ENST00000500025
Location (hg38): chr11:33161688-33191598
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2031 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000500025; ENST00000500025.2; RP11-348A11.4-001; OTTHUMT00000388660.1
Alternative gene names: ENSG00000247151; RP11-348A11.4; ENSG00000247151.2; OTTHUMG00000166243.1; CSTF3-AS1; ENSG00000247151.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -13.0996 non-coding 
CPAT coding probability 9.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CSTF3-DT:21 yes no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TCP11L1-1:2
3.1 lnc-TCP11L1-1:2
4.0 CSTF3-AS1:3
4.1 CSTF3-AS1:3
5.0 CSTF3-AS1:3
5.1 CSTF3-DT:11
5.2 CSTF3-DT:21