Transcript: CSTF3-DT:22

Basic information

LNCipedia transcript ID: CSTF3-DT:22 
LNCipedia gene ID: CSTF3-DT
Location (hg38): chr11:33237008-33237409
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 402 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT018697
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 112.1703 coding 
CPAT coding probability 39.64% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
CSTF3-DT:22 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HIPK3-1:1
4.0 lnc-HIPK3-1:1
4.1 CSTF3-AS1:10
5.0 CSTF3-AS1:10
5.1 CSTF3-DT:12
5.2 CSTF3-DT:22