Transcript: CTBP1-DT:22

Basic information

LNCipedia transcript ID: CTBP1-DT:22 
LNCipedia gene ID: CTBP1-DT
Location (hg38): chr4:1249273-1252106
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1647 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000196810.4|FTMT21500007030.1
Alternative gene names: MGC21675


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -19.6585 non-coding 
CPAT coding probability 31.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CTBP1-DT:22 yes no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 CTBP1-AS2:15
5.0 CTBP1-AS2:15
5.1 CTBP1-DT:4
5.2 CTBP1-DT:22