Transcript: CTBP1-DT:23

Basic information

LNCipedia transcript ID: CTBP1-DT:23 
LNCipedia gene ID: CTBP1-DT
RefSeq ID: NR_033339
Location (hg38): chr4:1249440-1253007
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2930 bp
Exons: 2
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT094687; NR_033339; NR_033339.1
Alternative gene names: MGC21675; CTBP1-AS2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.9955 non-coding 
CPAT coding probability 54.81% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
CTBP1-DT:23 yes no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C4orf42-1:7
4.0 CTBP1-AS2:2
4.1 CTBP1-AS2:2
5.0 CTBP1-AS2:2
5.1 CTBP1-DT:9
5.2 CTBP1-DT:23