Transcript: CYMP-AS1:3

Basic information

LNCipedia transcript ID: CYMP-AS1:3 
HGNC Gene Symbol: CYMP-AS1    
HGNC Full Gene Name: CYMP antisense RNA 1
Ensembl Gene ID: ENSG00000235407
Ensembl Transcript ID: ENST00000457402
RefSeq ID: NR_108042
Location (hg38): chr1:110487680-110490258
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2351 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00000602; ENST00000457402; ENST00000457402.1; RP11-470L19.2-001; OTTHUMT00000059079.1; NONHSAT005138; NR_108042; NR_108042.2
Alternative gene names: XLOC_000959; linc-HBXIP; ENSG00000235407; RP11-470L19.2; ENSG00000235407.1; OTTHUMG00000022783.1; CYMP-AS1; LOC440602


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 47.1113 non-coding 
CPAT coding probability 96.09% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
CYMP-AS1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KCNA10-1:1
3.1 lnc-KCNA10-1:1
4.0 lnc-KCNA10-1:1
4.1 lnc-KCNA10-1:1
5.0 lnc-KCNA10-1:1
5.1 CYMP-AS1:2
5.2 CYMP-AS1:3