Transcript: CYP4A22-AS1:2

Basic information

LNCipedia transcript ID: CYP4A22-AS1:2 
LNCipedia gene ID: CYP4A22-AS1
Location (hg38): chr1:47178169-47179271
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 363 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00000515
Alternative gene names: XLOC_000820; linc-CYP4A11-2; ncRNA-a3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -97.6315 non-coding 
CPAT coding probability 3.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CYP4A22-AS1:2 no no no no

Available literature

  1. Ørom (2010), Long noncoding RNAs with enhancer-like function in human cells., Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PDZK1IP1-1:1
3.1 lnc-PDZK1IP1-2:2
4.0 CYP4A22-AS1:2
4.1 CYP4A22-AS1:2
5.0 CYP4A22-AS1:2
5.1 CYP4A22-AS1:2
5.2 CYP4A22-AS1:2