Transcript: CYP4A22-AS1:3

Basic information

LNCipedia transcript ID: CYP4A22-AS1:3 
HGNC Gene Symbol: CYP4A22-AS1    
HGNC Full Gene Name: CYP4A22 antisense RNA 1
Ensembl Gene ID: ENSG00000225506
Ensembl Transcript ID: ENST00000444042
Location (hg38): chr1:47096653-47179271
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 921 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000444042; ENST00000444042.2; CYP4A22-AS1-001; OTTHUMT00000021645.2; NONHSAT003050
Alternative gene names: ENSG00000225506; RP1-18D14.3; ENSG00000225506.2; CYP4A22-AS1; OTTHUMG00000007848.2; ncRNA-a3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.5276 non-coding 
CPAT coding probability 13.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CYP4A22-AS1:3 no no no no

Available literature

  1. Ørom (2010), Long noncoding RNAs with enhancer-like function in human cells., Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PDZK1IP1-1:2
3.1 lnc-PDZK1IP1-2:1
4.0 CYP4A22-AS1:3
4.1 CYP4A22-AS1:3
5.0 CYP4A22-AS1:3
5.1 CYP4A22-AS1:3
5.2 CYP4A22-AS1:3