Transcript: CYYR1-AS1:5

Basic information

LNCipedia transcript ID: CYYR1-AS1:5 
LNCipedia gene ID: CYYR1-AS1
Location (hg38): chr21:26405943-26569252
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3412 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000197934.4|ENST00000357401.3
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 9.0764 non-coding 
CPAT coding probability 38.30% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
CYYR1-AS1:5 no no no no

Available literature

  1. Casadei (2014), Characterization of human gene locus CYYR1: a complex multi-transcript system., Mol. Biol. Rep.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 CYYR1-AS1:5
5.0 CYYR1-AS1:5
5.1 CYYR1-AS1:5
5.2 CYYR1-AS1:5