Transcript: DANT2:1

Basic information

LNCipedia transcript ID: DANT2:1 
LNCipedia gene ID: DANT2
Location (hg38): chrX:115916186-115969089
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2445 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00017083; ENST00000430756; ENST00000430756.1; RP11-761E20.1-001; OTTHUMT00000057981.1; NONHSAT138267
Alternative gene names: XLOC_008213; linc-LRCH2-1; ENSG00000235244; RP11-761E20.1; ENSG00000235244.2; OTTHUMG00000022240.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 19.4299 non-coding 
CPAT coding probability 9.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DANT2:1 no no no no

Available literature

  1. Figueroa (2015), Two novel DXZ4-associated long noncoding RNAs show developmental changes in expression coincident with heterochromatin formation at the human (Homo sapiens) macrosatellite repeat., Chromosome Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP1-241P17.4.1-3:1
3.1 lnc-RP1-241P17.4.1-3:1
4.0 DANT2:1
4.1 DANT2:1
5.0 DANT2:1
5.1 DANT2:1
5.2 DANT2:1