Transcript: DARS-AS1:17

Basic information

LNCipedia transcript ID: DARS-AS1:17 
LNCipedia gene ID: DARS-AS1
Location (hg38): chr2:136000413-136007542
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 414 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000399447.2; AC093391.2-005; OTTHUMT00000331709.1
Alternative gene names: ENSG00000231890.1; AC093391.2; OTTHUMG00000153578.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.5104 non-coding 
CPAT coding probability 4.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DARS-AS1:17 no no no no

Available literature

  1. Mimura (2017), Novel lnc RNA regulated by HIF-1 inhibits apoptotic cell death in the renal tubular epithelial cells under hypoxia., Physiol Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-UBXN4-2:5
4.0 DARS-AS1:17
4.1 DARS-AS1:17
5.0 DARS-AS1:17
5.1 DARS-AS1:17
5.2 DARS-AS1:17