Transcript: DDIT4-AS1:3

Basic information

LNCipedia transcript ID: DDIT4-AS1:3 
HGNC Gene Symbol: DDIT4-AS1    
HGNC Full Gene Name: DDIT4 antisense RNA 1
Ensembl Gene ID: ENSG00000269926
Ensembl Transcript ID: ENST00000491934
Location (hg38): chr10:72274915-72275980
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 847 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT013916; ENST00000491934.2
Alternative gene names: ENSG00000269926.1; RP11-442H21.2; DDIT4-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -68.1332 non-coding 
CPAT coding probability 71.03% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
DDIT4-AS1:3 yes no no no

Available literature

  1. Balloy (2017), Bronchial Epithelial Cells from Cystic Fibrosis Patients Express a Specific Long Non-coding RNA Signature upon <i>Pseudomonas aeruginosa</i> Infection., Front Cell Infect Microbiol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ASCC1-3:1
4.0 lnc-ASCC1-3:1
4.1 lnc-ASCC1-3:1
5.0 lnc-ASCC1-3:1
5.1 DDIT4-AS1:2
5.2 DDIT4-AS1:3