Transcript: DDX11-AS1:1

Basic information

LNCipedia transcript ID: DDX11-AS1:1 
HGNC Gene Symbol: DDX11-AS1    
HGNC Full Gene Name: DDX11 antisense RNA 1
Ensembl Gene ID: ENSG00000245614
Ensembl Transcript ID: ENST00000500527
RefSeq ID: NR_038927
Location (hg38): chr12:31020763-31073847
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2031 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000500527; ENST00000500527.1; RP11-551L14.5-001; OTTHUMT00000399893.1; NR_038927; NR_038927.2
Alternative gene names: ENSG00000245614; RP11-551L14.5; ENSG00000245614.2; OTTHUMG00000168487.1; DDX11-AS1; ENSG00000245614.3; ; CONCR


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 12.993 non-coding 
CPAT coding probability 16.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DDX11-AS1:1 yes no no no

Available literature

  1. Marchese (2016), A Long Noncoding RNA Regulates Sister Chromatid Cohesion., Mol. Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM60A-1:1
3.1 lnc-FAM60A-1:1
4.0 DDX11-AS1:1
4.1 DDX11-AS1:1
5.0 DDX11-AS1:1
5.1 DDX11-AS1:1
5.2 DDX11-AS1:1