Transcript: DENND6A-DT:10

Basic information

LNCipedia transcript ID: DENND6A-DT:10 
HGNC Gene Symbol: DENND6A-DT    
HGNC Full Gene Name: DENND6A divergent transcript
Ensembl Gene ID: ENSG00000241933
Ensembl Transcript ID: ENST00000465933
Location (hg38): chr3:57693205-57696596
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2919 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000465933; TCONS_00005522; ENST00000465933.1; RP11-755B10.3-001; OTTHUMT00000351592.1
Alternative gene names: ENSG00000241933; XLOC_002672; linc-SLMAP-1; RP11-755B10.3; ENSG00000241933.1; OTTHUMG00000158637.1; AC114480.1; DENND6A-DT


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.2984 non-coding 
CPAT coding probability 3.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DENND6A-DT:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLMAP-1:1
3.1 lnc-SLMAP-1:1
4.0 lnc-SLMAP-1:1
4.1 lnc-SLMAP-1:1
5.0 lnc-SLMAP-1:1
5.1 DENND6A-DT:5
5.2 DENND6A-DT:10