Transcript: DLGAP1-AS1:12

Basic information

LNCipedia transcript ID: DLGAP1-AS1:12 
LNCipedia gene ID: DLGAP1-AS1
Location (hg38): chr18:3594970-3596886
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1917 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: ucscGeneNc_uc002kmj_1
Alternative gene names: HsT914; FLJ35776


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -33.0128 non-coding 
CPAT coding probability 1.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DLGAP1-AS1:12 yes no no no

Available literature

  1. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TGIF1-2:10
4.0 DLGAP1-AS1:12
4.1 DLGAP1-AS1:12
5.0 DLGAP1-AS1:12
5.1 DLGAP1-AS1:12
5.2 DLGAP1-AS1:12