Transcript: DLGAP1-AS1:4

Basic information

LNCipedia transcript ID: DLGAP1-AS1:4 
HGNC Gene Symbol: DLGAP1-AS1    
HGNC Full Gene Name: DLGAP1 antisense RNA 1
Ensembl Gene ID: ENSG00000177337
Ensembl Transcript ID: ENST00000575606
Location (hg38): chr18:3594094-3597372
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 344 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000575606.1; RP11-874J12.2-003; OTTHUMT00000439281.1; NONHSAT057002; ENST00000575606.5
Alternative gene names: ENSG00000177337.3; RP11-874J12.2; OTTHUMG00000177863.2; DLGAP1-AS1; ENSG00000177337.7; HsT914; FLJ35776


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -95.2591 non-coding 
CPAT coding probability 1.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DLGAP1-AS1:4 yes no no no

Available literature

  1. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TGIF1-2:2
4.0 DLGAP1-AS1:4
4.1 DLGAP1-AS1:4
5.0 DLGAP1-AS1:4
5.1 DLGAP1-AS1:4
5.2 DLGAP1-AS1:4