Transcript: DLGAP1-AS2:2

Basic information

LNCipedia transcript ID: DLGAP1-AS2:2 
LNCipedia gene ID: DLGAP1-AS2
RefSeq ID: NR_119377
Location (hg38): chr18:3603737-3610089
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 923 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_119377; NR_119377.1
Alternative gene names: MGC11082; DLGAP1-AS2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 30.1159 non-coding 
CPAT coding probability 7.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DLGAP1-AS2:2 yes no no no

Available literature

  1. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AP002478.1-1:6
4.0 DLGAP1-AS2:2
4.1 DLGAP1-AS2:2
5.0 DLGAP1-AS2:2
5.1 DLGAP1-AS2:2
5.2 DLGAP1-AS2:2