Transcript: DLGAP1-AS2:3

Basic information

LNCipedia transcript ID: DLGAP1-AS2:3 
LNCipedia gene ID: DLGAP1-AS2
Location (hg38): chr18:3603738-3608314
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2239 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011
Alternative transcript names: ENST00000445581
Alternative gene names: ENSG00000238060; AP002478.2; MGC11082


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -14.4597 non-coding 
CPAT coding probability 6.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DLGAP1-AS2:3 yes no no no

Available literature

  1. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AP002478.1-1:1
3.1 lnc-AP002478.1-1:3
4.0 DLGAP1-AS2:3
4.1 DLGAP1-AS2:3
5.0 DLGAP1-AS2:3
5.1 DLGAP1-AS2:3
5.2 DLGAP1-AS2:3