Transcript: DLGAP1-AS2:4

Basic information

LNCipedia transcript ID: DLGAP1-AS2:4 
HGNC Gene Symbol: DLGAP1-AS2    
HGNC Full Gene Name: DLGAP1 antisense RNA 2
Ensembl Gene ID: ENSG00000262001
Ensembl Transcript ID: ENST00000572856
Location (hg38): chr18:3603738-3608336
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2261 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000572856.1; RP11-874J12.1-001; OTTHUMT00000439287.1; NONHSAT057009
Alternative gene names: ENSG00000262001.1; RP11-874J12.1; OTTHUMG00000177864.1; DLGAP1-AS2; MGC11082


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -14.4597 non-coding 
CPAT coding probability 6.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DLGAP1-AS2:4 yes no no no

Available literature

  1. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AP002478.1-1:2
4.0 DLGAP1-AS2:4
4.1 DLGAP1-AS2:4
5.0 DLGAP1-AS2:4
5.1 DLGAP1-AS2:4
5.2 DLGAP1-AS2:4