Transcript: DLGAP1-AS3:2

Basic information

LNCipedia transcript ID: DLGAP1-AS3:2 
HGNC Gene Symbol: DLGAP1-AS3    
HGNC Full Gene Name: DLGAP1 antisense RNA 3
Ensembl Gene ID: ENSG00000263724
Ensembl Transcript ID: ENST00000583571
Location (hg38): chr18:3891932-3896658
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 753 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000583571.1; RP11-340P19.1-001; OTTHUMT00000441783.1; NONHSAT057019
Alternative gene names: ENSG00000263724.1; RP11-340P19.1; OTTHUMG00000178391.1; DLGAP1-AS3;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -53.6471 non-coding 
CPAT coding probability 26.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DLGAP1-AS3:2 yes no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AP002478.1-3:2
4.0 DLGAP1-AS3:2
4.1 DLGAP1-AS3:2
5.0 DLGAP1-AS3:2
5.1 DLGAP1-AS3:2
5.2 DLGAP1-AS3:2