Transcript: DLGAP1-AS3:3

Basic information

LNCipedia transcript ID: DLGAP1-AS3:3 
LNCipedia gene ID: DLGAP1-AS3
Location (hg38): chr18:3868180-3887069
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1258 bp
Exons: 3
Sources: Nielsen et al.,2014
Alternative transcript names: ucscGeneNc_uc002kml_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.8105 non-coding 
CPAT coding probability 0.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DLGAP1-AS3:3 yes no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AP002478.1-8:1
4.0 lnc-AP002478.1-8:1
4.1 DLGAP1-AS3:3
5.0 DLGAP1-AS3:3
5.1 DLGAP1-AS3:3
5.2 DLGAP1-AS3:3