Transcript: DLGAP1-AS4:1

Basic information

LNCipedia transcript ID: DLGAP1-AS4:1 
HGNC Gene Symbol: DLGAP1-AS4    
HGNC Full Gene Name: DLGAP1 antisense RNA 4
Ensembl Gene ID: ENSG00000263878
Ensembl Transcript ID: ENST00000582054
RefSeq ID: NR_102696
Location (hg38): chr18:3962353-4013943
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 757 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000582054.1; RP11-502P1.2-001; OTTHUMT00000441774.1; NONHSAT057021; NR_102696; NR_102696.1
Alternative gene names: ENSG00000263878.1; RP11-502P1.2; OTTHUMG00000178387.1; DLGAP1-AS4;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -146.5714 non-coding 
CPAT coding probability 3.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DLGAP1-AS4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AP002478.1-4:1
4.0 DLGAP1-AS4:1
4.1 DLGAP1-AS4:1
5.0 DLGAP1-AS4:1
5.1 DLGAP1-AS4:1
5.2 DLGAP1-AS4:1