Transcript: DLGAP1-AS5:4

Basic information

LNCipedia transcript ID: DLGAP1-AS5:4 
HGNC Gene Symbol: DLGAP1-AS5    
HGNC Full Gene Name: DLGAP1 antisense RNA 5
Ensembl Gene ID: ENSG00000261520
Ensembl Transcript ID: ENST00000565811
Location (hg38): chr18:4264633-4295405
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2594 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000565811.1; RP11-138C24.1-001; OTTHUMT00000431514.1
Alternative gene names: ENSG00000261520.1; RP11-138C24.1; OTTHUMG00000176106.1; DLGAP1-AS5; ENSG00000261520.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 40.1327 non-coding 
CPAT coding probability 12.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DLGAP1-AS5:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AP002478.1-5:4
4.0 DLGAP1-AS5:4
4.1 DLGAP1-AS5:4
5.0 DLGAP1-AS5:4
5.1 DLGAP1-AS5:4
5.2 DLGAP1-AS5:4