Transcript: DLGAP4-AS1:10

Basic information

LNCipedia transcript ID: DLGAP4-AS1:10 
LNCipedia gene ID: DLGAP4-AS1
Location (hg38): chr20:36508160-36573385
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 859 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000232907.3|ENST00000439595.1
Alternative gene names: CCAT7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -78.4854 non-coding 
CPAT coding probability 0.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DLGAP4-AS1:10 no no no no

Available literature

  1. Kim (2015), Role of MYC-regulated long noncoding RNAs in cell cycle regulation and tumorigenesis., J. Natl. Cancer Inst.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 DLGAP4-AS1:10
5.0 DLGAP4-AS1:10
5.1 DLGAP4-AS1:10
5.2 DLGAP4-AS1:10