Transcript: DLGAP4-AS1:3

Basic information

LNCipedia transcript ID: DLGAP4-AS1:3 
LNCipedia gene ID: DLGAP4-AS1
Location (hg38): chr20:36508160-36573275
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 749 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000439595.1; RP5-977B1.7-002; OTTHUMT00000079034.1
Alternative gene names: ENSG00000232907.2; RP5-977B1.7; OTTHUMG00000032391.2; ENSG00000232907.3; ; CCAT7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -78.4854 non-coding 
CPAT coding probability 0.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DLGAP4-AS1:3 no no no no

Available literature

  1. Kim (2015), Role of MYC-regulated long noncoding RNAs in cell cycle regulation and tumorigenesis., J. Natl. Cancer Inst.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLA2-3:2
4.0 DLGAP4-AS1:3
4.1 DLGAP4-AS1:3
5.0 DLGAP4-AS1:3
5.1 DLGAP4-AS1:3
5.2 DLGAP4-AS1:3