Transcript: DLGAP4-AS1:4

Basic information

LNCipedia transcript ID: DLGAP4-AS1:4 
HGNC Gene Symbol: DLGAP4-AS1    
HGNC Full Gene Name: DLGAP4 antisense RNA 1
Ensembl Gene ID: ENSG00000232907
Ensembl Transcript ID: ENST00000439595
RefSeq ID: NR_109939
Location (hg38): chr20:36507702-36573275
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1207 bp
Exons: 5
Sources: NONCODE v4; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT079571; NR_109939; ENST00000439595.5; NR_109939.1
Alternative gene names: ENSG00000232907.7; DLGAP4-AS1; ; CCAT7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.5253 non-coding 
CPAT coding probability 3.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DLGAP4-AS1:4 no no no no

Available literature

  1. Kim (2015), Role of MYC-regulated long noncoding RNAs in cell cycle regulation and tumorigenesis., J. Natl. Cancer Inst.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLA2-3:7
4.0 DLGAP4-AS1:4
4.1 DLGAP4-AS1:4
5.0 DLGAP4-AS1:4
5.1 DLGAP4-AS1:4
5.2 DLGAP4-AS1:4