Transcript: DLGAP4-AS1:5

Basic information

LNCipedia transcript ID: DLGAP4-AS1:5 
HGNC Gene Symbol: DLGAP4-AS1    
HGNC Full Gene Name: DLGAP4 antisense RNA 1
Ensembl Gene ID: ENSG00000232907
Ensembl Transcript ID: ENST00000559455
Location (hg38): chr20:36562207-36573157
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 584 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000559455.1; RP5-977B1.7-004; OTTHUMT00000417901.1; NONHSAT079578; ENST00000559455.5
Alternative gene names: ENSG00000232907.2; RP5-977B1.7; OTTHUMG00000032391.2; ENSG00000232907.3; ENSG00000232907.7; DLGAP4-AS1; ; CCAT7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -78.4854 non-coding 
CPAT coding probability 2.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DLGAP4-AS1:5 no no no no

Available literature

  1. Kim (2015), Role of MYC-regulated long noncoding RNAs in cell cycle regulation and tumorigenesis., J. Natl. Cancer Inst.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLA2-3:3
4.0 DLGAP4-AS1:5
4.1 DLGAP4-AS1:5
5.0 DLGAP4-AS1:5
5.1 DLGAP4-AS1:5
5.2 DLGAP4-AS1:5