Transcript: DLGAP4-AS1:7

Basic information

LNCipedia transcript ID: DLGAP4-AS1:7 
HGNC Gene Symbol: DLGAP4-AS1    
HGNC Full Gene Name: DLGAP4 antisense RNA 1
Ensembl Gene ID: ENSG00000232907
Ensembl Transcript ID: ENST00000433238
Location (hg38): chr20:36512609-36526130
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 593 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000433238.1; RP5-977B1.12-001; OTTHUMT00000417903.1; NONHSAT079572; ENST00000433238.5
Alternative gene names: ENSG00000259729.1; RP5-977B1.12; OTTHUMG00000172330.1; ENSG00000232907.3; RP5-977B1.7; ENSG00000232907.7; DLGAP4-AS1; ; CCAT7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.0335 non-coding 
CPAT coding probability 28.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DLGAP4-AS1:7 yes no no no

Available literature

  1. Kim (2015), Role of MYC-regulated long noncoding RNAs in cell cycle regulation and tumorigenesis., J. Natl. Cancer Inst.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLA2-3:5
4.0 DLGAP4-AS1:7
4.1 DLGAP4-AS1:7
5.0 DLGAP4-AS1:7
5.1 DLGAP4-AS1:7
5.2 DLGAP4-AS1:7