Transcript: DLX6-AS1:7

Basic information

LNCipedia transcript ID: DLX6-AS1:7 
LNCipedia gene ID: DLX6-AS1
Location (hg38): chr7:96968798-97014060
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 580 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000437331.1; DLX6-AS1-004; OTTHUMT00000334367.1
Alternative gene names: ENSG00000231764.2; DLX6-AS1; OTTHUMG00000154198.3; FLJ34048; Evf-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -65.2583 non-coding 
CPAT coding probability 0.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DLX6-AS1:7 yes no no no

Available literature

  1. Zeng (2017), Long noncoding RNA DLX6-AS1 promotes renal cell carcinoma progression via miR-26a/PTEN axis., Cell Cycle
  2. He (2015), LongTarget: a tool to predict lncRNA DNA-binding motifs and binding sites via Hoogsteen base-pairing analysis., Bioinformatics
  3. Li (2015), Expression of long non-coding RNA DLX6-AS1 in lung adenocarcinoma., Cancer Cell Int.
  4. Li (2015), Study on expression of lncRNA RGMB-AS1 and repulsive guidance molecule b in non-small cell lung cancer., Diagn Pathol
  5. Li (2015), Construction and analysis of lncRNA-lncRNA synergistic networks to reveal clinically relevant lncRNAs in cancer., Oncotarget
  6. Peffers (2015), Transcriptome analysis of ageing in uninjured human Achilles tendon., Arthritis Res. Ther.
  7. Wang (2015), Genome-wide differential expression of synaptic long noncoding RNAs in autism spectrum disorder., Transl Psychiatry
  8. Mercer (2010), Long noncoding RNAs in neuronal-glial fate specification and oligodendrocyte lineage maturation., BMC Neurosci
  9. Bond (2009), Balanced gene regulation by an embryonic brain ncRNA is critical for adult hippocampal GABA circuitry., Nat. Neurosci.
  10. Dinger (2008), Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation., Genome Res.
  11. Jeong (2008), Dlx genes pattern mammalian jaw primordium by regulating both lower jaw-specific and upper jaw-specific genetic programs., Development
  12. Sone (2007), The mRNA-like noncoding RNA Gomafu constitutes a novel nuclear domain in a subset of neurons., J. Cell. Sci.
  13. Feng (2006), The Evf-2 noncoding RNA is transcribed from the Dlx-5/6 ultraconserved region and functions as a Dlx-2 transcriptional coactivator., Genes Dev.
  14. Kohtz (2004), Developmental regulation of EVF-1, a novel non-coding RNA transcribed upstream of the mouse Dlx6 gene., Gene Expr. Patterns
  15. Liu (1997), Dlx genes encode DNA-binding proteins that are expressed in an overlapping and sequential pattern during basal ganglia differentiation., Dev. Dyn.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DLX5-2:3
4.0 DLX6-AS1:7
4.1 DLX6-AS1:7
5.0 DLX6-AS1:7
5.1 DLX6-AS1:7
5.2 DLX6-AS1:7