Transcript: DNAJB8-AS1:5

Basic information

LNCipedia transcript ID: DNAJB8-AS1:5 
LNCipedia gene ID: DNAJB8-AS1
Location (hg38): chr3:128470895-128471517
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 346 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT091765
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -55.0347 non-coding 
CPAT coding probability 9.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DNAJB8-AS1:5 no no no no

Available literature

  1. Bryzghalov (2016), Retroposition as a source of antisense long non-coding RNAs with possible regulatory functions., Acta Biochim. Pol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EEFSEC-1:6
4.0 DNAJB8-AS1:5
4.1 DNAJB8-AS1:5
5.0 DNAJB8-AS1:5
5.1 DNAJB8-AS1:5
5.2 DNAJB8-AS1:5