Transcript: DNM3OS:1

Basic information

LNCipedia transcript ID: DNM3OS:1 
LNCipedia gene ID: DNM3OS
RefSeq ID: NR_038397
Location (hg38): chr1:172136879-172144835
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 7957 bp
Exons: 1
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT007596; NR_038397; NR_038397.2
Alternative gene names: MIR199A2HG; DNM3-AS1; DNM3OS


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 29.3875 non-coding 
CPAT coding probability 0.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DNM3OS:1 no no no no

Available literature

  1. Yin (2010), TWISTing stemness, inflammation and proliferation of epithelial ovarian cancer cells through MIR199A2/214., Oncogene
  2. Lee (2009), Twist-1 regulates the miR-199a/214 cluster during development., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PIGC-1:4
4.0 DNM3OS:1
4.1 DNM3OS:1
5.0 DNM3OS:1
5.1 DNM3OS:1
5.2 DNM3OS:1