Transcript: DPP10-AS1:3

Basic information

LNCipedia transcript ID: DPP10-AS1:3 
HGNC Gene Symbol: DPP10-AS1    
HGNC Full Gene Name: DPP10 antisense RNA 1
Ensembl Gene ID: ENSG00000235026
Ensembl Transcript ID: ENST00000432658
RefSeq ID: NR_036580
Location (hg38): chr2:115144048-115161343
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 730 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000432658.1; AC066593.1-001; OTTHUMT00000330837.1; NONHSAT073872; NR_036580; NR_036580.1
Alternative gene names: ENSG00000235026.1; AC066593.1; OTTHUMG00000153346.1; DPP10-AS1; ENSG00000235026.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -190.6243 non-coding 
CPAT coding probability 12.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DPP10-AS1:3 no no no no

Available literature

  1. Lin (2017), Long Noncoding RNA BC032913 as a Novel Therapeutic Target for Colorectal Cancer that Suppresses Metastasis by Upregulating TIMP3., Mol Ther Nucleic Acids
  2. Mirza (2015), Transcriptomic landscape of lncRNAs in inflammatory bowel disease., Genome Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC35F5-9:1
4.0 DPP10-AS1:3
4.1 DPP10-AS1:3
5.0 DPP10-AS1:3
5.1 DPP10-AS1:3
5.2 DPP10-AS1:3